rs52145652 SNP Detail

Summary

• ID
  rs52145652
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:59927947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGGGGACT GGGTTTAGTC
  AGAGAAGATA CACCTAGCAC TCAGGAAACT GAAGGCCCCA GGTAGTGAGA TGTCAGGTGG
  GGTGTGGGTG AGGTGTCAGG ACATTCTTGT GGAAATAGGG GTGTGAGGAG GACGTATGGG
  ATGGGGAACA GTCAGGGGGG TAGACTGGGG TGGGGAGGAA TAAAATCTGG ATTGTAAAAA
  R
  TAGTGTTAAA AAGTGTGTGT GTGTGGGGGG GGGGGGGGGT AGACTACACG ACTAGCAGTA
  GATGGCCAGC AAAAACAAGA TCTTAAAAGT GTCTGTTGAG ATTCCTTGTC TATTCAATGG
  TATTTGGCCA CTGCTGTACT ATTCTGAGCA TGCTATTTGA ATTTCTATGG ATGCAAGTTC
  CCATATCTGA AGATCATTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148519350	ENSMUSSNP2234619	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52145652					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:59927947 () rs orientation: forward

Symbol	Name	Function Class
Gm52849	predicted gene, 52849	593 bp upstream
Tssr46351	transcription start site region 46351	591 bp upstream