rs52146345 SNP Detail

Summary

• ID
  rs52146345
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:120568542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C AAGCATTTCC TCACACACCC AGTCGACCCA TGTAAGCAGA
  CACATAGAGA CACAGACCAA CAAGAAAGAA AGAAAGAAAG AAAGAAAGAA AGAAAGAAAG
  A
  AAGGAAGGAA GAAAGAAAGA AAGAAAGAAA GAAAGAAAGA AAGAAAGAAA GAAAGGTAAT
  GCACATGTTA ACAGGAAATT ATAAACGAGA AATTTTACAT G                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss149179474	ENSMUSSNP4308824	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52146345					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:120568542 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16490	CpG island 16490	382 bp proximal
Lhx5	LIM homeobox protein 5	1222 bp upstream
Lhx5as1	LIM homeobox 5, antisense 1	within coordinates
Rr619309	regulatory region 619309	1112 bp distal
Rr619310	regulatory region 619310	137 bp distal
Rr619311	regulatory region 619311	206 bp proximal
Rr619312	regulatory region 619312	1109 bp proximal
Rr619313	regulatory region 619313	1266 bp proximal
Tssr48502	transcription start site region 48502	1414 bp upstream
Tssr48503	transcription start site region 48503	1432 bp upstream
Tssr48504	transcription start site region 48504	1453 bp upstream
Tssr48505	transcription start site region 48505	1472 bp upstream
Tssr48506	transcription start site region 48506	1492 bp upstream
Tssr52923	transcription start site region 52923	1280 bp downstream