rs52147379 SNP Detail

Summary

• ID
  rs52147379
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38937397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAAA TAATATATAT GGTGTATATT
  S
  TATATACATA TACATATAAG GTAGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss134846099	ENSMUSSNP430458	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320724077	CHEV_3_38782170	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs52147379					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38937397 () rs orientation: forward

Symbol	Name	Function Class
C230034O21Rik	RIKEN cDNA C230034O21 gene	within coordinates
Cpgi13105	CpG island 13105	1734 bp proximal
Gm65329	predicted gene, 65329	1418 bp downstream
Rr575715	regulatory region 575715	within coordinates
Rr575716	regulatory region 575716	223 bp distal
Rr575717	regulatory region 575717	362 bp proximal
Rr575718	regulatory region 575718	1225 bp proximal