rs52147403 SNP Detail

Summary

• ID
  rs52147403
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:113617264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCAGGGAAA GAGAGGCTTC
  CTTGAGCCTT GTGGGGCCAG GAACCGCTGG TTGGCTGTTA ATGGTTCATT TCAATGGTCT
  ACTTAATGAC ATCTGAAAAT CAACTGAGAT GGGGGGGCTA GGGGTGCATC CTCTCAGAGG
  CCAGGGGAGA GGGGAGGGGC GAGCAGGATG GGGAGCAACA TTTGGAATGT AAATAAATAA
  M
  ATAATTTAAG AAAATAAATA CAATCACCCG AAGAGCTTCT GGGCGTACAC GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GCGTGCACGC
  GAGAGCACAC TCGCACACGC TCGGGGTGGG GTGCATGTTG AGGTAGAAAG GCCCGCCCAC
  CATGGGCAGC ACCATTCTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132843828	ENSMUSSNP6486082	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52147403					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:113617264 () rs orientation: forward

Symbol	Name	Function Class
Cdc42ep4	CDC42 effector protein 4	412 bp downstream
Rr459435	regulatory region 459435	347 bp distal
Rr459436	regulatory region 459436	768 bp proximal