rs52147563 SNP Detail

Summary

• ID
  rs52147563
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:93612530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATGAAGTG GAAAACAGTA GAGGAAGACA TCCCAAATTT
  GACCTCTGGT CTCCACATAC ATGTGCACAT ATGAGCACAT ACACCCACAT GACTTGTGCA
  Y
  ACACACACAC ACACACACAC ACACACACAC GAACTGAAAG GACAGTAAAA ATTAGGTGTC
  AAAGTCAGGT AGAGAGTAAA GTCAAGTTCA AAATGAAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145617842	ENSMUSSNP3344187	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss322805316	CHEV_8_95409801	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52147563					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:93612530 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lpcat2	lysophosphatidylcholine acyltransferase 2			Intron
				Noncoding-Transcript-Variant
Tssr78766	transcription start site region 78766			23 bp downstream
Tssr78767	transcription start site region 78767			1498 bp upstream
Tssr78768	transcription start site region 78768			1547 bp upstream