rs52147593 SNP Detail

Summary

• ID
  rs52147593
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134485979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTATTTTA TTATTATTTA
  AGACAATATA TGTCTTATTC AGGCTCCAAA TCCCTGTAGA GCTAAGAAAA GTTTTGCCTT
  CTTCAAGAAT TGCTGAACTG TTTTAGAGGC CAGGTACTTC GATAGAGCTT ATTAAAGACT
  GGGGCTTTTC TCCCCTTCAC TGAAAAATGT TTTGTATTTT TTATATTTAA AAAAATTTTT
  W
  AAATGTGTGT TGAGCTGAAG GGGTCTGCAA CCCTATAGGT GGAACAATAT GAACTAACCA
  GTACCCCCAG AGCTCATGTC TCTAGCTGCA TATATATCAG AAGATGACCT AGTTGGCCAT
  CATTGGGAAA AGAGGCCCCT TGGTCTTGCA AACTTTATAT GCCCCAGTAC AGGGGAATGC
  CAGGGCCAAG AAGTGGGAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145508343	ENSMUSSNP3076014	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52147593					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134485979 () rs orientation: forward

Symbol	Name	Function Class
Cpgi772	CpG island 772	1181 bp distal
Cpgi773	CpG island 773	1645 bp proximal
Gm57134	predicted gene, 57134	1139 bp upstream
Kdm5b	lysine demethylase 5B	1937 bp upstream
Rr367005	regulatory region 367005	981 bp downstream
Rr367006	regulatory region 367006	1800 bp upstream
Rr418945	regulatory region 418945	1150 bp distal
Rr418947	regulatory region 418947	1807 bp distal
Rr418948	regulatory region 418948	788 bp distal
Rr418949	regulatory region 418949	1447 bp proximal
Tssr8904	transcription start site region 8904	1916 bp upstream
Tssr8905	transcription start site region 8905	1949 bp upstream
Tssr8906	transcription start site region 8906	1973 bp upstream
Tssr13798	transcription start site region 13798	1239 bp upstream