rs52147596 SNP Detail

Summary

• ID
  rs52147596
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:59699092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA CAAAAATTGT GGGCTTGAGA
  R
  ATGGCTCAGT GGTTAGGAGC ACTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss132241328	ENSMUSSNP2913300	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss323699332	CHEV_11_59621768	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52147596					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59699092 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2968	CpG island 2968			1270 bp proximal
Flcn	folliculin			Intron
				Noncoding-Transcript-Variant
Gm16062	predicted gene 16062			1814 bp upstream
Rr448261	regulatory region 448261			97 bp proximal
Rr448262	regulatory region 448262			258 bp proximal
Rr448263	regulatory region 448263			1312 bp proximal
Rr448264	regulatory region 448264			1596 bp proximal
Rr448265	regulatory region 448265			1740 bp proximal
Tssr101863	transcription start site region 101863			1841 bp upstream
Tssr108246	transcription start site region 108246			1508 bp downstream
Tssr108247	transcription start site region 108247			1760 bp downstream