rs52147883 SNP Detail

Summary

• ID
  rs52147883
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:68830076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTCCTTTT GGTTTTTTAT TTCCTTCTGC AGATTTTCTG
  TATTTTCTGA CTTTCTACTT AATTTTATCT ACCATCCTGT GCATCCCACA CACTTTATTG
  Y
  CCATTTTTCC TCATGCAAAT TTCAAGACCT AACATGTCTC CCCTTTGCAG CTTGTATTCC
  TCCCCGACTG TGTTCCTCAG TTGCTACTGC CATCGCGGTC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss62443718	NES17255321	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs52147883					SNP	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62443718	NES17255321	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:68830076 () rs orientation: forward

Symbol	Name	Function Class
Rr296117	regulatory region 296117	789 bp proximal
Tssr126359	transcription start site region 126359	1667 bp upstream