rs52147959 SNP Detail

Summary

• ID
  rs52147959
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46043618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCATAGGT GTTTTGGAGC
  TCTCTCCCAG CATGCCTGTA CGGAGCATAC GTGTCTTTGT GACAACCTGA TTGCTGCAGG
  CGTGGGGGGG GGAGGGGCAG CTTAGCCCCT CTCAGGATGG CCACCACTCA GGATGGCCCA
  CCTTTTCTGT CCCAGCCGAG GGAGGGAGAA ACCTCAGGCC ACAGGTGGGA AGGGGGAGCC
  R
  GGTTGCGTCT TGGGATAGGG AGTGGGGGCT GGTGGGTGGG GTGGAACCGG CATGACCTGG
  ACAAAGCTGG TTCTTATCCT ACATTCTAAA TGCTGAATGG GTGAGCTCAT CTCTGCTACT
  TCAGGTGACA CAGAACAGGG ACACTATGTC CTAGATGAAA TCAGATTTCA TGGGCTTTAG
  ACGGTTCTAT TTCATTTTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60259547	NES15752857	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52147959					SNP	G	G	G	G	G	G	G	G	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60259547	NES15752857	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46043618 () rs orientation: forward

Symbol	Name	Function Class
1600014C23Rik	RIKEN cDNA 1600014C23 gene	172 bp downstream
BE949265	cDNA sequence BE949265	474 bp downstream
Cpgi9207	CpG island 9207	816 bp proximal
F630040K05Rik	RIKEN cDNA F630040K05 gene	1814 bp upstream
Rr331489	regulatory region 331489	818 bp distal
Rr339882	regulatory region 339882	582 bp proximal
Tssr144810	transcription start site region 144810	1893 bp upstream
Tssr148277	transcription start site region 148277	1151 bp downstream