rs52148368 SNP Detail

Summary

• ID
  rs52148368
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:28720774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATTTTAC TGCAATTCAG
  TTAGTGATTA TTTTCTAGGC AGTCAATTCT GGGTCAGATG CTCGGTAGCT CTCCTGCCTT
  TGTACTATCC CTCGCTTCTT CATCACTGCA CACTGCTGTA CAGTTCCAGT GAACTATGAC
  AGTCTGGCAG ATGGAGATGT AAACAGATAG ATACATGAGT TGGTTACTCT GTCCATGAAA
  R
  CATCAAATAA TTCAGAGACT GAATGAAGAC TTTGTCTCAC TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGCA TATGTCTGTG TGTTTGTGTG TATATGTGTT TCTGTGTCTG TGTGTATGTC
  TGTGTGTGTA TCTGTGTGTA TTGTCTGTGT GTGTGTCTCT GTGTGTGTGT TGTCTGTGTG
  TGTTGTGTCT GTGTGCATCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60201964	NES15703428	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		A	G	G	A		G
ss325126483	CHEV_16_28902108	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs52148368					SNP	G	G	G	G	G	G	A	G	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60201964	NES15703428	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:28720774 () rs orientation: forward

Symbol	Name	Function Class
Mb21d2	Mab-21 domain containing 2	within coordinates
Tssr140667	transcription start site region 140667	571 bp downstream