rs52148474 SNP Detail

Summary

• ID
  rs52148474
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127584339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGCAAAC TTTTCATCCA
  ATCGGAAACT AGAAGGATGC CGCTTGTGCA TTCTGGCTCA CTAGCCGACA TCCCGGTCCC
  CCGCCGTCAC ATGCTGTTAT TGAACTTGGG AAATATCCCA GTCCGGAGTG CACAAGCCTC
  TTCCAGACCC ACCTCCCGGC CGTAGCCGGG TCACAGGAAA GCCCAGCGTC GTTGTGATCC
  R
  GGATTTTCCA ATTTTCCCAG AGGATTCGCA TCCGGTTGCT GGGAGAGGCT CCGTGGGGGG
  TCCGCGGCCA GGGAGGGGAG TGGGGCCGGG GTGGGGATAA GAAGTGGAGG GTGGGCAGAG
  CGAGAATCGC CAACGCTGGA AAGCGCTGAG CTTGCCTGAC GCTCTCCTCT CCGTACTTGG
  TTGCCCCCAC TCTCTCTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135871377	ENSMUSSNP1572865	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320956929	CHEV_3_127493608	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52148474					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127584339 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13800	CpG island 13800	562 bp distal
Cpgi13801	CpG island 13801	within coordinates
Gm56817	predicted gene, 56817	433 bp upstream
Gm65225	predicted gene, 65225	within coordinates
Rr584860	regulatory region 584860	768 bp distal
Rr584861	regulatory region 584861	871 bp distal
Rr584862	regulatory region 584862	444 bp distal
Rr584863	regulatory region 584863	within coordinates
Rr584864	regulatory region 584864	125 bp proximal
Tifa	TRAF-interacting protein with forkhead-associated domain	within coordinates
Tssr31594	transcription start site region 31594	1488 bp downstream
Tssr31595	transcription start site region 31595	1476 bp downstream
Tssr31596	transcription start site region 31596	1443 bp downstream
Tssr31597	transcription start site region 31597	1403 bp downstream
Tssr31598	transcription start site region 31598	1380 bp downstream
Tssr31599	transcription start site region 31599	881 bp downstream
Tssr31600	transcription start site region 31600	813 bp downstream
Tssr31601	transcription start site region 31601	761 bp downstream
Tssr31602	transcription start site region 31602	707 bp downstream
Tssr31603	transcription start site region 31603	689 bp downstream
Tssr31604	transcription start site region 31604	565 bp downstream
Tssr31605	transcription start site region 31605	51 bp downstream
Tssr31606	transcription start site region 31606	110 bp upstream
Tssr31607	transcription start site region 31607	348 bp upstream
Tssr31608	transcription start site region 31608	416 bp upstream
Tssr31609	transcription start site region 31609	467 bp upstream
Tssr31610	transcription start site region 31610	576 bp upstream
Tssr31611	transcription start site region 31611	684 bp upstream
Tssr35598	transcription start site region 35598	932 bp upstream
Tssr35599	transcription start site region 35599	850 bp upstream
Tssr35600	transcription start site region 35600	822 bp upstream
Tssr35601	transcription start site region 35601	789 bp upstream
Tssr35602	transcription start site region 35602	472 bp upstream