rs52148484 SNP Detail

Summary

• ID
  rs52148484
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156957242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACTGAGGCA GGATTATAAC TTCAAAGTCA GCAGGGCCTA
  TAAAGCAAGA CTTCTCTCTC CTGCCCTCCC CCAGGGAAAA ACAAAAAAAG AAATCCCTCT
  Y
  TCTGTGTGCA CATATATGTA TGTATTTATG TATGTGTGTA TATATGTATG TATGTAATGT
  ATGTATATAC TAATAGATTT CTCTTAGTTC CCTCCTTCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148092201	ENSMUSSNP3773939	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss320584256	CHEV_2_156941058	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52148484					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156957242 () rs orientation: forward

Symbol	Name	Function Class
Rr568435	regulatory region 568435	362 bp distal
Rr568436	regulatory region 568436	1632 bp proximal
Rr568437	regulatory region 568437	1805 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron
Tssr27142	transcription start site region 27142	1917 bp upstream
Tssr27143	transcription start site region 27143	996 bp upstream