rs52150055 SNP Detail

Summary

• ID
  rs52150055
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3337472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGTCCTG GAACTCACTC
  TGTAGACCAG GCTGGCCTCG AACCCAGAAA TTCACTTGCC TCTGCCTCCC AAGTGCTGGG
  ATTAAAGGCG TGCACCACCA CACCGGGCTT GCCTTAGTTG TTTTGAAACA TAATTTTATT
  TGTTTATTTT GTTTGTTTAC TTTGAGGTAT GCAGCTTTAT TCTAGAGGGT CAGTAAACAT
  W
  TGCTACTCAA AAAATTTTAT GCCAGCTGGA TATGATGCTG CACATTTGTA TTCCTAGCAT
  ACAAAGGCTG AGACAGGATA AACATTATGA GTTTGAGGTC ACCTAGGTCT TCATAGTAAG
  AAACTGCCTG AATAAACAAA ACATAAGCAT ATATTGGATA TGTGGGTATA TACCCACTTC
  AAAGGTAGAT ATCAGAAATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60679013	NES16231740	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	A	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs52150055					SNP	T	A	T	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60679013	NES16231740	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3337472 () rs orientation: forward

Symbol	Name	Function Class
Alkbh8	alkB homolog 8, tRNA methyltransferase	within coordinates
Rr673628	regulatory region 673628	1984 bp distal
Rr673629	regulatory region 673629	514 bp distal
Tssr83613	transcription start site region 83613	1971 bp downstream
Tssr83614	transcription start site region 83614	1941 bp downstream