rs52151664 SNP Detail

Summary

• ID
  rs52151664
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:69285512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACTCGTACA GTccagtgag atggctaaag
  aggctcaagg cactaacaag atgatctgag tttgaccctc agaacccaca gggtggcaag
  agagaactga tccccaaagt tgccctctga cctacacata cacacaccat atacatatat
  R
  tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tatatgtgtg tgtgtgtgtg tgtgtatgta
  tgtatgtgta tatgtatgta tacacattca tacaGAGAGA GAGAAAGAAA GAATATTAAA
  AACTAAATCA AAAGAATTGA CTCACACGCA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136600613	ENSMUSSNP6438509	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss322998172	CHEV_9_69226037	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52151664					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:69285512 () rs orientation: forward

Symbol	Name	Function Class
Rora	RAR-related orphan receptor alpha	within coordinates
Rr682167	regulatory region 682167	1046 bp distal