rs52152818 SNP Detail

Summary

• ID
  rs52152818
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137177453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA AAAGACAGAC ACAAAGGAAA
  R
  AACAAGAGAA ACAGGATATT GTGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321701915	CHEV_5_137624476	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52152818					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137177453 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	654 bp downstream
Tssr1678	transcription start site region 1678	1879 bp downstream
Tssr49309	transcription start site region 49309	1173 bp upstream
Tssr49310	transcription start site region 49310	1533 bp upstream
Tssr49311	transcription start site region 49311	1547 bp upstream
Tssr49312	transcription start site region 49312	1927 bp upstream
Tssr53917	transcription start site region 53917	1899 bp upstream
Tssr53918	transcription start site region 53918	1839 bp upstream
Tssr53919	transcription start site region 53919	1033 bp downstream
Tssr53920	transcription start site region 53920	1049 bp downstream
Tssr53921	transcription start site region 53921	1204 bp downstream
Tssr53922	transcription start site region 53922	1245 bp downstream
Tssr53923	transcription start site region 53923	1286 bp downstream
Tssr53924	transcription start site region 53924	1300 bp downstream
Tssr53925	transcription start site region 53925	1338 bp downstream
Tssr53926	transcription start site region 53926	1369 bp downstream
Tssr53927	transcription start site region 53927	1518 bp downstream
Tssr53928	transcription start site region 53928	1536 bp downstream
Tssr53929	transcription start site region 53929	1573 bp downstream
Tssr53930	transcription start site region 53930	1638 bp downstream
Tssr53931	transcription start site region 53931	1663 bp downstream
Tssr53932	transcription start site region 53932	1679 bp downstream
Tssr53933	transcription start site region 53933	1717 bp downstream
Tssr53934	transcription start site region 53934	1749 bp downstream
Tssr53935	transcription start site region 53935	1800 bp downstream
Tssr53936	transcription start site region 53936	1821 bp downstream
Tssr53937	transcription start site region 53937	1911 bp downstream
Tssr53938	transcription start site region 53938	1947 bp downstream