rs52153894 SNP Detail

Summary

• ID
  rs52153894
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:37134566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGGAATA CTTGGTAGGT
  CTACCTACAT CGATGGAGTA GGTGGGTGTC ATAGCAACCG AAGAGGAAAA ACTGGGGGGC
  TCCCCAACAC AGCTCTGTGT GTGTGTGTGT GTGTGTGTAT GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGATTTA GAGCTCTCAA ACAAATACAA
  G
  CCTCTTTCAA ATCAACTTGC CCTAGAAGGT TTCTATGCAG ACTGTCAGCC ATTCAGACCA
  TACTGTGACT TAGTAAATAG ATGCTTTTCA ATGGTGTTAT GACATGAAAG CACAGGTCAG
  CCTCAGCACT GTTGACATTT GGGGCTGGAG ACTTCTTTGA TGTGGGGAGC TGTGCACTGT
  CAGATATTCA GCCGCTACTC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147623131	ENSMUSSNP781293	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52153894					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:37134566 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7042	CpG island 7042	1038 bp proximal
Gm34820	predicted gene, 34820	1324 bp upstream
Gm41301	predicted gene, 41301	within coordinates
Gm41302	predicted gene, 41302	within coordinates
Gm63629	predicted gene, 63629	within coordinates
Rr714	regulatory region 714	41 bp proximal
Rr501169	regulatory region 501169	within coordinates
Rr501170	regulatory region 501170	834 bp proximal
Rr501171	regulatory region 501171	1427 bp proximal
Rr501172	regulatory region 501172	1554 bp proximal
Tssr131093	transcription start site region 131093	1579 bp upstream
Tssr134082	transcription start site region 134082	1429 bp downstream