rs52153986 SNP Detail

Summary

• ID
  rs52153986
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57405411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAG GAACCCAAAC AAAACTTTGT
  G
  CACATGGAAA TGCAGGCTAG AGCCA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325427542	CHEV_17_57237834	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52153986					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57405411 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9395	CpG island 9395	1645 bp distal
Gm11110	predicted gene 11110	within coordinates
Gm46589	predicted gene, 46589	within coordinates
Gm56907	predicted gene, 56907	within coordinates
Rr529274	regulatory region 529274	1440 bp distal
Rr529275	regulatory region 529275	1644 bp distal
Rr529276	regulatory region 529276	309 bp proximal
Rr529277	regulatory region 529277	748 bp proximal
Rr529278	regulatory region 529278	1174 bp proximal