rs52154397 SNP Detail

Summary

• ID
  rs52154397
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:55130832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGGTCCT GAGTCCAAAT
  CCCAGCAACC ACATGGTGGC TCACAACCAT CGGTAATGGG ATCTGACGCC CTCTTCTGGT
  GTACCTGAAG ACTGCAACAG CTTACTCACA TATATAAAAT AAATACATCT TAAAACCAAA
  ACCAAAACAA CACAAAACAA AAACAAGAAA AAGAAAAGAA AAAAGAAGAA CCGAGCAGTA
  R
  TAGGTAAATG CTGGGGCAGT GGGTATAGTT CAGTGCTAGG AAACTTGTTC AGCTTGCACA
  GGGCCTCAAG CCCCACACTT GCACATGAAA TAACATAGAG TATTTATTGC AGTCTAAATA
  TATGCTTTGC TAAATGTTTT CTATGGAAGG TTTACAACAA TTCCATTATA AGTACTCATA
  AAATTCCCAG TTTATGGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63515167	NES17007398	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52154397					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63515167	NES17007398	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:55130832 () rs orientation: forward

Symbol	Name	Function Class
D15Mit26	DNA segment, Chr 15, Massachusetts Institute of Technology 26	1119 bp proximal
D15Mit26.1	DNA segment, Chr 15, Massachusetts Institute of Technology 26.1	1208 bp proximal
Rr303058	regulatory region 303058	32 bp distal
Rr303059	regulatory region 303059	1169 bp proximal