rs52156194 SNP Detail

Summary

• ID
  rs52156194
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52473779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTGCACT CCTGACTGTC
  CTGGAAGTCT CTCTGTAGAC CAGGCTGGCC TCAAACTCAC AGAGATCTGC CTGCCTCTGC
  CTAAGTGCTG GGGTTAAAGG CGTAAGCCAT CACCGTCCAG TGATAAAATG TCTTTTAAAT
  GAAGTCGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT TATATCTAAT TGGATCTTTT
  Y
  AATTAACTGA GCTTGAAATG TTTTTTGCTT TGCCTTTCAA ACAAGTTTTG TTTTTTGTTT
  TTGTTTTTGT TTTTGTTTTT TTTTTTGGCA ACTGAGTTAA AATGCTGGGG TATATGGTAA
  AGGAGAACAT TTGGCAGTGT TTAGACTAGT AAGCGACTTA ATCACTGTCA GCTTTTCTGA
  GACTCCAGTG TTCTCATCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60409010	NES15911280	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52156194					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60409010	NES15911280	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52473779 () rs orientation: forward

Symbol	Name	Function Class
D3Mit364	DNA Segment, Chr 3, Massachusetts Institute of Technology-364	within coordinates
Rr576544	regulatory region 576544	1103 bp proximal