rs52156253 SNP Detail

Summary

• ID
  rs52156253
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:3691675 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTTAG ATCTCTGACA CGATAGACTT
  A
  GATACACTTT AAAAACAAAA CAAAA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146748252	ENSMUSSNP3232050	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss323242340	CHEV_10_6604866	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52156253					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:3691675 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi1270	CpG island 1270	609 bp distal
Gm30164	predicted gene, 30164	within coordinates
Plekhg1	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	within coordinates
Rr224667	regulatory region 224667	within coordinates
Tssr92214	transcription start site region 92214	1404 bp downstream
Tssr92215	transcription start site region 92215	1245 bp downstream
Tssr92216	transcription start site region 92216	1189 bp downstream
Tssr92217	transcription start site region 92217	1004 bp downstream