rs52156797 SNP Detail

Summary

• ID
  rs52156797
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156188510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T AACTGTACTG TCCTAAAGCC ACCCAGTTCC ACCTATGCCT
  ACCCCACCTT CCAGCCAGAA TCATAGGTCT GTTTTTTTGT TTTTGTTTTT TTTTTTTTTG
  K
  TTTTGGTTTT GGGTTTTTTT TTGTTTTTGT TTTTTCTTTT CTTTTCTTTT CTTTTTTTTT
  GTTTTTGGAA TTCTCGTTCC TTTATTTTTT GATAAACTGC T                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148070362	ENSMUSSNP218885	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52156797					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156188510 () rs orientation: forward

Symbol	Name	Function Class
Cnbd2	cyclic nucleotide binding domain containing 2	within coordinates
Gm14253	predicted gene 14253	612 bp downstream
Tssr27051	transcription start site region 27051	1381 bp downstream
Tssr27052	transcription start site region 27052	1441 bp downstream