rs52157660 SNP Detail

Summary

• ID
  rs52157660
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:58812584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACC CTGTCTCGAA AATAACAAAA
  A
  CAAAACCAAA AACAAACAAA CAAAC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136525209	ENSMUSSNP742443	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss322974029	CHEV_9_58753108	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52157660					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:58812584 () rs orientation: forward

Symbol	Name	Function Class
Neo1	neogenin	within coordinates
Rr196035	regulatory region 196035	1584 bp distal
Rr212064	regulatory region 212064	1783 bp distal