rs52157669 SNP Detail

Summary

• ID
  rs52157669
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:29582583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTTTTGT TCTGGTGTGT
  GTGTGTGTGT GTGTGCAGGG GTGATATCTA AATAACATAT ACAGCTAATA TTTTTAACAA
  ACATTTTAAG TTGGCATATC CCATATATGA ATATATTGCC TAAAACAGTT ATAATTTGCA
  CAAGTAGAAA CAACTGTACA TTTTTCCATC AGTAGGCTAT GTTTCAGTGC CATGTGACTC
  R
  GTCTGAAGGG TCTGAAGTAT CTTTGTGCTC TCTTCCTTTC TCCTTCCCCC TCTCCCTGCC
  TCTCCTGGCC CCCTGGCCTC TCTAACTTTG CCCCTGTTTG TCTCTCTACC ACTCTCTTCT
  GTCTCTGCCT CTTCCATATC TGCATTGTTC TAGCATACAC AATGACTTTT CTGGGAACGT
  TTTCACAATG AAAGTGATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61585711	NES17530540	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52157669					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61585711	NES17530540	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:29582583 () rs orientation: forward

Symbol	Name	Function Class
Gm20208	predicted gene, 20208	1474 bp upstream
Myt1l	myelin transcription factor 1-like	within coordinates
Rr464423	regulatory region 464423	1480 bp distal
Rr464424	regulatory region 464424	1375 bp distal
Rr464425	regulatory region 464425	316 bp proximal
Rr464426	regulatory region 464426	1612 bp proximal
Tssr113063	transcription start site region 113063	696 bp upstream
Tssr113064	transcription start site region 113064	708 bp upstream
Tssr113065	transcription start site region 113065	767 bp upstream
Tssr113066	transcription start site region 113066	844 bp upstream
Tssr113067	transcription start site region 113067	867 bp upstream
Tssr113068	transcription start site region 113068	893 bp upstream
Tssr113069	transcription start site region 113069	1977 bp upstream
Tssr116026	transcription start site region 116026	1441 bp upstream