rs52158106 SNP Detail

Summary

• ID
  rs52158106
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37127214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATGAAAA CTTTCACACT
  CTGTGTGGCC CAGAGGACTG CAGCCACTGC CTCATTTGTG GTAGGCAACT GCTCTGCCAC
  TGATTCCACC CTCCCAGCCT GTTTTGTGTT TATTTTTTCT TTAAAAATTT TGTGTGTAGG
  CTGGGTGTAT GCTTATGTAA GTGTGTGCGT GTATGTATTC AAGTGTTCCT GTGTGCATAA
  Y
  AGTTCTTGTT ACTAATATGC AAGTGTTTGG TAGAGGCCAG AGGTCAATGC CAGATGTCTT
  CTTTGGTTGC TTCTCCATCT TATTTTTTCA GACGGGATCT TCCTCAGAGC CTGGAGCTCA
  CCAGTTGGCT GGACTGACCA CCAGTGAGCT CCAGGACCTT CCTTTCTCAC TTCCCAGTGC
  TGGCGTTACA GATGGCCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61379571	NES16766537	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52158106					SNP	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61379571	NES16766537	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37127214 () rs orientation: forward

Symbol	Name	Function Class
Gm67746	predicted gene, 67746	within coordinates
Rr383211	regulatory region 383211	1183 bp upstream
Rr676647	regulatory region 676647	904 bp distal
Tmem218	transmembrane protein 218	within coordinates