rs52158459 SNP Detail

Summary

• ID
  rs52158459
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34574082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATGTGTGT ACTCTCACGC
  ATATAAACAC ATTCAATTAT CCATCAATCA ATCAATGTGA AGGGATTCCT TTTCTGTTGT
  GGAAATGAAA CACCGTAACC AGAGCAATTT GTAGAAGGCA ACAATTTATT GTGGCTTAAG
  ATTCCAGAGG GATAAGAGTC CATCATTGTG AGGAGCCAGG CAGCAGGTGG CAGAAAACCA
  G
  GAAGCTGAGA CACCACAGCT TGAAACACAC ATGCATGTGC AAGCAAGAAC AAACATACAC
  ACACATACAC ATGCACTCAC AAGTGCGAGT GTGCATGAGC ATCTTTCTAA ACAGCACCAT
  CAACTGGGGT CTAAGTACTC AAACACATGA GCCTATAGGA GACTGTGTCA TTCACACCAC
  CAAAAAATAA TATGAAAAAA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss149092903	ENSMUSSNP4278596	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52158459					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34574082 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20241	CpG island 20241	1187 bp proximal
Dctn6	dynactin 6	within coordinates
Rr400814	regulatory region 400814	1418 bp upstream
Tssr80889	transcription start site region 80889	834 bp downstream
Tssr80890	transcription start site region 80890	888 bp downstream
Tssr80891	transcription start site region 80891	1515 bp downstream
Tssr80892	transcription start site region 80892	1583 bp downstream
Tssr80893	transcription start site region 80893	1864 bp downstream