rs52159393 SNP Detail

Summary

• ID
  rs52159393
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:113861472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTATTACTG ATATGTGAAA
  AAGGTGGTTT ACAAAACTTC TATTACAGAT GATCAATTTC TTTTATATTC TTTATCAATT
  TTTGTGGTTT ACTAAAGTTG TTATGTGCCC TCCAAATATG CTAGGACACA TTCCCACGGA
  GGTCTGAGAC CATGCAGAAT ATCAGATTCT ATGGATAGTG CTTTTTAACA TTGATTTACT
  Y
  AGTGTGTATG TGTGTGGGGC TATGTCAGTG CCACAGTGCA TGTGTGTGTG AAGATCAGAG
  GACAATTGTA TTAGTCAGTT CTCTCCACCC CCTTGCTGAG GTAGGCTCTC TCTTCTTCTT
  TCTGTGCTTG TAGATCTCAG GCTTACGAGC TGTCTCAGTC AGTGGTCTAT TTCTGTGAAG
  AGCCACCATG ACCATGACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61224542	NES16847011	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs52159393					SNP	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61224542	NES16847011	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:113861472 () rs orientation: forward

Symbol	Name	Function Class
Rr383939	regulatory region 383939	1098 bp upstream