rs52159415 SNP Detail

Summary

• ID
  rs52159415
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53617307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGA TGAGGGGTAA CCCCACCCTA
  R
  GCCCGGAACG GACCACCCCC CACCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss149017482	ENSMUSSNP7204090	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss324342378	CHEV_13_53558640	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52159415					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53617307 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5621	CpG island 5621	482 bp distal
Gm33763	predicted gene, 33763	within coordinates
Rr388456	regulatory region 388456	531 bp downstream
Rr406701	regulatory region 406701	within coordinates
Rr480050	regulatory region 480050	1150 bp distal
Rr480051	regulatory region 480051	1221 bp distal
Rr480052	regulatory region 480052	within coordinates
Rr480053	regulatory region 480053	1085 bp proximal