rs52159553 SNP Detail

Summary

• ID
  rs52159553
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:52228308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATCCCCAA AGTTCATTGG
  CCCACGCACG AGTCTAACCA AGCCATAGAG TTACAGGCAG AGTGAGAAAT TCTGCCCCAA
  ATTCTACACT TGATCTTAAC CAAAAGGCCG AGAAGCGTTC TGCCCCAAAT TCTAAGGTAG
  GGAGTGGTAG AAAAACAAAA CAAAACAAAA AACCTCTGAT TTTTATCTCT GGCTCTTTCC
  Y
  CACAAACACT CACAGTTGTG CATACACATA TTTGTGTACA CACATGCATA CACACATACA
  CAAAACTGAA AGGAAACCAT AGTGTTCATG ACAATATGCA CAGATAAGTG TATACATTTT
  TATAGTGACT AATATCTATG GATTCAAGGT TTGAAAAAAC TGATTTCTCT CACTGAATTT
  CCTACTCACT CTGGATTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60215429	NES15718880	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52159553					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60215429	NES15718880	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:52228308 () rs orientation: forward

Symbol	Name	Function Class
Alcam	activated leukocyte cell adhesion molecule	within coordinates
Tssr141455	transcription start site region 141455	1209 bp upstream
Tssr141456	transcription start site region 141456	336 bp upstream
Tssr141457	transcription start site region 141457	276 bp upstream
Tssr141458	transcription start site region 141458	247 bp upstream
Tssr141459	transcription start site region 141459	234 bp upstream
Tssr141460	transcription start site region 141460	191 bp upstream
Tssr141461	transcription start site region 141461	176 bp upstream
Tssr141462	transcription start site region 141462	125 bp upstream