rs52159969 SNP Detail

Summary

• ID
  rs52159969
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:13066811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAAATCAT GGATGCTCCA
  ATTGTTTATA TAGAAGGCAT AATAGAGCAG GGGAAATTGC TAAGTGGTTA GTGTATGAGC
  CAGTAGTAAG TACCAGGATT GGATCCCCAG AACCTACATA AAAGTGAACA CAGGGGCTTC
  CTAGAGCATG CTGGCCAGCA AGACTACATA TCAGCCAGCT CTGGGTCTGA TTGAGACATT
  R
  CATCAGGCCT CCACATGCAA ATGTCCACAC ATGTACCCAC ACACATGCAC ACACATTCAC
  ACACACACAC ACACACACAC ACACACACAC ACACAGAGCG CACACACACA GCACACAGCA
  CACACTATAG AATATTTAAA GCAAGATGGC ATAATATTTA AGCATAGTAT TTGTAACCTT
  CTGTAGACTA ACCATCTTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63662287	NES17058205	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52159969					SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63662287	NES17058205	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:13066811 () rs orientation: forward

Symbol	Name	Function Class
D16Mit88	DNA segment, Chr 16, Massachusetts Institute of Technology 88	17 bp proximal
Tssr137124	transcription start site region 137124	1838 bp downstream