rs52160149 SNP Detail

Summary

• ID
  rs52160149
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:125219141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTACCTCCA ATCCTGACAA
  CCAATTTGTT TTTGAACCTT CCATTCACGC TTATAGCTCC TAGGGTGAAA GAAGAGAATG
  GACTTTCAAT AGTTATCCTT TGGTCTTTAC TTGCAGACAA TAATGCATAT GTAGTGTATG
  CATGCAGTGC AAGTACACAC ACACACACAC ACACACACAC ACACACACAC ACACATATTC
  W
  CACATGCATT CACACATACA CACACACACA TAAATGAATA ATAAAAAATG TTTTAATCAA
  TCTATGTACC GTTGATTATT TAAGTAGACC AGGAACTTTA AATCACTTTT TAGTTACTTT
  ATTATATGGC ATGGTCATAT AACAGAAAGA TGTGAAAATG AATTTCAATA CAAGGAAAAG
  CAATTCATTT TATGTTATAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135808259	ENSMUSSNP623188	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52160149					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125219141 () rs orientation: forward

Symbol	Name	Function Class
Ndst4	N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	Intron
Rr584610	regulatory region 584610	685 bp proximal