rs52161590 SNP Detail

Summary

• ID
  rs52161590
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:23772746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGAGCCT GTGAGCCTGT
  GAGTGTCAGA GCACCTATGA TCCTGTGATC CTGTGATCCT GTGATCCTGT GAGCCTGTGA
  GCCTGTGAGT GTCAGAGCAC CTGTGAGCCT GTGAGCCTGT GAGCCTGTGA GCCTGTGAGC
  CTGTGAGTGT CAGAGCACCT GTGATCCTGT GAGCCTTGGC ATTTCAGAGC ACCTGGGAGT
  Y
  GGGATCCCTC TGGGTGTTAT GGGCCTGGGT GCGGAGCTAG CACCCCAGGT CTACTCAGGA
  CACAAGCTCA GACAGGAAAG ATTCCATGCC ACTGGCTGGG CCAGGGTTCA TGTGTCCCCT
  GGATCCTGGG AGTCCCAGTT ACTCCTGGTT TGAGGGCAAA TGTTGTGGCT GAATAATTGT
  CTATGAAAGT ATTTACACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148586186	ENSMUSSNP4218299	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52161590					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:23772746 () rs orientation: forward

Symbol	Name	Function Class
Gm36694	predicted gene, 36694	within coordinates
Gm44943	predicted gene 44943	594 bp upstream