rs52162476 SNP Detail

Summary

• ID
  rs52162476
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56261592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCACGGT GCCCTACATG
  CTAAATGTCA CTGCAGTGCA CCCAGGCGGC GCCAGCAGCA GCCTCCTAGC CTTTGTGGCT
  GAGCGAATCA GTGAGTGTCT GTCCTCCCTG CCCCTCTCCA CCTGCTCCAT CCCGTGGCTC
  CTCCCTGCCG CCGCCCCCCT ACCCCCACCC ACCTCTTGCT TTGTCCCTGC AGCTTCCATC
  S
  TTTGGCTCTG CTCCCGCCTC ACAGGCTTCC TGTCGATGCC CCGGGGCCTT TGCATTGCTT
  CCTTCCTTGG CTTTCCTGGG TCTCTGCTCC AATGTTGGCT CCTCAGTGAG GCCTCCCCAA
  AAGTATATCA TTAAACATAA GCAATAGTCA CAGTTAAGAG AGGATGAAAG CCAAAGGTGG
  TGTACAAGTC TTTAATCCCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62801945	NES17366691	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52162476					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62801945	NES17366691	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56261592 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9328	CpG island 9328	1388 bp proximal
Ebi3	Epstein-Barr virus induced gene 3	within coordinates
Gm16712	predicted gene, 16712	179 bp downstream
Rr340009	regulatory region 340009	1391 bp distal
Tssr145247	transcription start site region 145247	1893 bp downstream
Tssr145248	transcription start site region 145248	1867 bp downstream
Tssr145249	transcription start site region 145249	1853 bp downstream
Tssr145250	transcription start site region 145250	1834 bp downstream
Tssr145251	transcription start site region 145251	1810 bp downstream
Tssr145252	transcription start site region 145252	1796 bp downstream
Tssr145253	transcription start site region 145253	1778 bp downstream
Tssr145254	transcription start site region 145254	1754 bp downstream
Tssr145255	transcription start site region 145255	1730 bp downstream
Tssr145256	transcription start site region 145256	686 bp downstream
Tssr145257	transcription start site region 145257	254 bp downstream
Tssr145258	transcription start site region 145258	221 bp downstream