rs52162775 SNP Detail

Summary

• ID
  rs52162775
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19240526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTGGGTG AGGTAACATC
  AGAACTTTTC CTACCCCTTG GCACTTTTCT GTAAAACAAA TATTTTTTTT CTTTCAAAAA
  GCAAATCTTG CTGGGCAGTG ATGGCGCACA CCTTTAATTC TAGCACTCCG GAGGCAGAGG
  CAGGTGGATT TCTGAGTTCG AGGCCAGCCT GGTCTACAGA GTGAGTTCCT GGACAGCCAG
  K
  GCTATACAGA AAAACCCTGT CTCGAAAACA AAACAAAACA AAACAAAAGC AAAGCAAAAC
  AAAAGCAAAG CAAAGCTTAA AAGTTCAAAA GCATAAGGAC TGCAGGTCTT TCTTCGATTA
  GATCCTGGCT GGATGTATTT CAAACTCTCT TTTTCCTTCA CCAGGGTTTG GTACCAGGCA
  CCATGTTGAT AGGCTCTTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134665702	ENSMUSSNP5870457	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52162775					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19240526 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13001	CpG island 13001	1393 bp proximal
Mtfr1	mitochondrial fission regulator 1	965 bp upstream
Rr397614	regulatory region 397614	1624 bp upstream
Tssr28500	transcription start site region 28500	940 bp upstream
Tssr28501	transcription start site region 28501	959 bp upstream
Tssr28502	transcription start site region 28502	997 bp upstream
Tssr28503	transcription start site region 28503	1004 bp upstream
Tssr28504	transcription start site region 28504	1723 bp upstream
Tssr28505	transcription start site region 28505	1737 bp upstream
Tssr28506	transcription start site region 28506	1750 bp upstream
Tssr28507	transcription start site region 28507	1852 bp upstream
Tssr28508	transcription start site region 28508	1864 bp upstream
Tssr28509	transcription start site region 28509	1926 bp upstream