rs52163179 SNP Detail

Summary

• ID
  rs52163179
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161112821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTGTCCA CACAACTATT
  ATTTGCTGTG TATTTGAAAT TCAAACTTAA CCAGCCACCC TATGCTTTCC CCAGAACTCC
  TAAGTGGGGT GTGCTTGTGC TAAGTTTAAT TACCTCGTAG GGCTGTTGTG GTGTTTAAGT
  ACCATCACGT TTACTACCAC TTGGAAAGTT TTTTAAGGAA AGTTTTTTTT TTGTTTGTTT
  K
  TTTTTTTTTT TTTTTTGTCC GAGACAGGGT TTGTCTGTAT AGTCCTGGCT GTCCTGGAAC
  TCACTTTGTA GACCAGGCTG GCCTCGAACT CAGAAATCTG CCTGCCTCTG CCTCCCAAGT
  GCTGGGATTA AAGGCGTTCA CCACCACTGC CCGGCTTAAG GAAAGTTTTT TAACTTGTAT
  ATAGGAAAAC CAATGGATTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	LEWES/EiJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ
ss352144670	MGP_WTSI_1_163215381	EVA_MGPV3	EVA_MGPV3	f	SNP	G	T	G	G	G	G	T	G	T	G	T	T	T	T	T	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	LEWES/EiJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ
rs52163179					SNP	G	T	G	G	G	G	T	G	T	G	T	T	T	T	T	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352144670	MGP_WTSI_1_163215381	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161112821 () rs orientation: forward

Symbol	Name	Function Class
Rr421789	regulatory region 421789	1448 bp proximal
Rr421790	regulatory region 421790	1633 bp proximal