rs52163381 SNP Detail

Summary

• ID
  rs52163381
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107463153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA CCAAAAATAA ATAAATAAAT
  A
  AATTAATTAA TTAAAAAAAA AAAAG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136948584	ENSMUSSNP3998193	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52163381					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107463153 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22297	CpG island 22297	1464 bp proximal
Gm16343	predicted gene 16343	within coordinates
Hyal3	hyaluronoglucosaminidase 3	within coordinates
Ifrd2	interferon-related developmental regulator 2	1764 bp upstream
Naa80	N(alpha)-acetyltransferase 80, NatH catalytic subunit	1906 bp downstream
Rr401663	regulatory region 401663	1383 bp upstream
Rr686552	regulatory region 686552	1504 bp proximal
Rr686553	regulatory region 686553	1699 bp proximal
Tssr87008	transcription start site region 87008	1688 bp upstream
Tssr87009	transcription start site region 87009	1719 bp upstream
Tssr87010	transcription start site region 87010	1757 bp upstream
Tssr87011	transcription start site region 87011	1803 bp upstream
Tssr87012	transcription start site region 87012	1912 bp upstream