rs52164221 SNP Detail

Summary

• ID
  rs52164221
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37087162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGG AGGGAAGAAG AAAGAGAGGT
  R
  GGGAGGAAAG GAAGGAGGGA AGGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136308974	ENSMUSSNP6013739	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss322906186	CHEV_9_36983451	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52164221					SNP	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37087162 () rs orientation: forward

Symbol	Name	Function Class
Gm67648	predicted gene, 67648	within coordinates
Rr401317	regulatory region 401317	1221 bp upstream
Rr676635	regulatory region 676635	117 bp proximal
Rr676636	regulatory region 676636	1111 bp proximal
Rr676637	regulatory region 676637	1393 bp proximal
Rr676638	regulatory region 676638	1538 bp proximal