rs52165299 SNP Detail

Summary

• ID
  rs52165299
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133738431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA GAGAAACCCT GTCTCGAGGG
  R
  AAAAAAAAAA AAAAAGTCAA CAGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147514419	ENSMUSSNP306771	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321344537	CHEV_4_133567035	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs52165299					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133738431 () rs orientation: forward

Symbol	Name	Function Class
Lin28a	lin-28 homolog A	within coordinates
Rr377233	regulatory region 377233	within coordinates
Tssr1330	transcription start site region 1330	1312 bp downstream
Tssr43852	transcription start site region 43852	1261 bp downstream
Tssr43853	transcription start site region 43853	1287 bp downstream