rs52167652 SNP Detail

Summary

• ID
  rs52167652
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:128063002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCCCGGGC CACTCGGTGC
  CTGGCACCCC GGGTCTCGGG TACTCACAGA GTCCGGGGCT GTCCGTCGTC TTCCATCATG
  GTGGGTGCGA CGGAGTGATC CCGGGACAAG GGGGAGGGCA GGGCTGGGGA GGGGAGGGGG
  CGGGAAGGAA GGGGAGGGGG GCTCCGGGCG CCGGCTGGGG ACAGAGGAAA AGGTACTGAA
  Y
  CCCGCTCTCG GGTCCGCTCC CCCCAGCCCG CTCCGGACAC TGCGCTCCAA CCAGGAGGAG
  CAGGAGGAGG AGGAGGATGA ACAAAATGGC CGCCACCACC AGCCAGGCAG GAAACGCGGC
  AGGGCGCAGG CGCGGCCCGC CAGGTCACTG CTCAGGCCAG CTGCGACGGC CTGTCCGGCA
  AAAGTAGCTA AAGAGACAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61060898	NES16065829	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52167652					SNP	T	C	C	T	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61060898	NES16065829	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:128063002 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19791	CpG island 19791			within coordinates
Gm32816	predicted gene, 32816			530 bp upstream
Rr368466	regulatory region 368466			319 bp upstream
Rr656040	regulatory region 656040			1075 bp distal
Rr656041	regulatory region 656041			292 bp distal
Rr656042	regulatory region 656042			within coordinates
Rr656043	regulatory region 656043			812 bp proximal
Rr656044	regulatory region 656044			1048 bp proximal
Tial1	Tia1 cytotoxic granule-associated RNA binding protein-like 1			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr2414	transcription start site region 2414			83 bp upstream
Tssr69425	transcription start site region 69425			659 bp upstream
Tssr75109	transcription start site region 75109			1552 bp upstream
Tssr75110	transcription start site region 75110			101 bp upstream
Tssr75111	transcription start site region 75111			35 bp downstream
Tssr75112	transcription start site region 75112			49 bp downstream
Tssr75113	transcription start site region 75113			111 bp downstream
Tssr75114	transcription start site region 75114			271 bp downstream
Tssr75115	transcription start site region 75115			301 bp downstream
Tssr75116	transcription start site region 75116			352 bp downstream