rs52169888 SNP Detail

Summary

• ID
  rs52169888
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:89039558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGATATTT TTTGAAATAT
  ATGAGAGACT TGGGTGATGT CATTATGCCT GTGGTTTTTG CTGCCAATCA TCCAGGTATA
  TAAAAGGCCT GTGGCAGATG TTGAAACACA CACTCCAGAA ACCTACTGCT TAATCTTCCT
  CTGAACACTC CACTCCTGAC AACATGTGCT ACTACGGAGG ATATTATGGA GGCCTGGGCT
  R
  TGGCTATGGA GGCCTAGGCT ATGGCTATGG CTGTGGCTAT GGTGGATATG GTTATGGCTG
  CTGCCGCCCA CTGTGCTGTG GAAGATACTG GTCTTATGGC TTCTACTGAG GACCTTATGT
  AGAGACCCAG CCTTTCTAAC CAGAAGTGTT TCCAAGTGTT TTCACACCTG AAACTCAAAC
  ATGTCTTCAA AAATTTCAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148513985	ENSMUSSNP5724410	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52169888					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:89039558 () rs orientation: forward

Symbol	Name	Function Class
Gm35004	predicted gene, 35004	within coordinates