rs52171171 SNP Detail

Summary

• ID
  rs52171171
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53376495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CTTACACTTA AGGATAGCAC ACAGATAAAA ATTGACATAT
  ATATATATAT GTATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT
  A
  GGCAGTTCAG CCACAAATCC ATTGGTATTT TTGCCTTGTC ATTTTCGTGC TGTTCTGTGA
  CTGAACCTCA GCTCGTCCCT ATTTTGAAAC TGTGATGGAT T                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss137751771	ENSMUSSNP6665906	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52171171					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53376495 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr267616	regulatory region 267616	within coordinates
Rr267617	regulatory region 267617	1507 bp proximal