rs52171453 SNP Detail

Summary

• ID
  rs52171453
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:82941656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAAGAGA CTCTAGGCTT
  TCCTCTGACT TCCACAAACC CACATGAAAT GTCTCCATTT GTGCACATGT ACACACATAC
  ACACACACAC ACGCACACAC ACGCGCACAC ACACACACAC ACACACGCAC GCACATGTAC
  ATACAATCAC ACACATACAT GCATACTCCG CACAAATAAA TCTTTTAGGC TATATTTACG
  R
  TCTGATTTCG CTTATTTCTT GAATAGGTTT TTTTTTTATT TCCCTATCTA GATTTTTCAT
  TTTCTCTGTG TCAGAATTGA TGTCTAATTT CTTGTGCCTT CAGGCCCCCC TCCCTGAGAC
  TTAAAGAGGA ACATATAAAA GCAAAGTAAG AAAGGCGAGA CAGCCTGACT TAAACAGTCT
  TTTTGCCCTG GCAGTATTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60904310	NES15955795	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52171453					SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60904310	NES15955795	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:82941656 () rs orientation: forward

Symbol	Name	Function Class
M1ap	meiosis 1 associated protein	within coordinates