rs52171906 SNP Detail

Summary

• ID
  rs52171906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69836445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCACCTGC AATCCCAGTA
  CTAGATCCTG GAGAGCACTG GCTAGCAATC CTAGTGAGAC ACTGTATCCA TATACAAGGG
  GGAAAATGGT TGAAGAAGAT GGCTAGTGTT AACCTTTGGC TTCCAAATGC CACACACACA
  CACACACACA CACACACACA CACACACACA TTTATGCGCG CACACATGAA CACACATATA
  Y
  AGATGCATAT ATAGCCCAAG AAAACAGGAC AATGGGTTAA AAATACAAAA TGAAAACAAG
  CTGGAAGCTC AAAACTCAAA AACTCTAGCA AAGTCGAGTT GTTTTAAATT CTGCTTCTTA
  GAGACCCGTG AAAAGACTGT CTGCAGTTGA CGCCAAGAGA GCCCCACACC TCTCCTGTCC
  ACCTTCTTAC TCTTACATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss137860594	ENSMUSSNP2158059	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs52171906					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69836445 () rs orientation: forward

Symbol	Name	Function Class
4930512B01Rik	RIKEN cDNA 4930512B01 gene	673 bp upstream
Cdkl1	cyclin dependent kinase like 1	within coordinates
Cpgi4702	CpG island 4702	801 bp proximal
Rr265514	regulatory region 265514	within coordinates
Tssr116527	transcription start site region 116527	584 bp downstream
Tssr116528	transcription start site region 116528	603 bp downstream
Tssr116529	transcription start site region 116529	610 bp downstream
Tssr116530	transcription start site region 116530	934 bp downstream
Tssr116531	transcription start site region 116531	989 bp downstream
Tssr116532	transcription start site region 116532	1558 bp downstream
Tssr116533	transcription start site region 116533	1623 bp downstream
Tssr116534	transcription start site region 116534	1640 bp downstream
Tssr116535	transcription start site region 116535	1654 bp downstream
Tssr116536	transcription start site region 116536	1682 bp downstream