rs52171930 SNP Detail

Summary

• ID
  rs52171930
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128583129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TGGGAGAATT GCAAGGAGGA CAATGTGTGA GCTTTTGAAA
  ACTTAGTTGA GGTTCTTATT AGCCTGTTTT GTTTCTTTTT TTTTTTTTTT TTTTTCCTTT
  G
  GGTTTTTTTT TTTTTTTTTT TTTTTGGTTT TTCGAGACAG GGTTTCTCTG TGTAGTCCTG
  GCTGTCCTGG AACTCACTCT GTAGACCAGA CTGGCCTCGA A                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147740807	ENSMUSSNP3808385	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs52171930					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128583129 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2419	CpG island 2419	442 bp proximal
Gm31504	predicted gene, 31504	1378 bp downstream
Gm66065	predicted gene, 66065	911 bp upstream
Pym1	PYM homolog 1, exon junction complex associated factor	629 bp upstream
Rr224483	regulatory region 224483	928 bp distal
Rr224484	regulatory region 224484	71 bp proximal
Rr385481	regulatory region 385481	65 bp upstream
Tssr96443	transcription start site region 96443	786 bp downstream
Tssr96444	transcription start site region 96444	528 bp upstream
Tssr96445	transcription start site region 96445	590 bp upstream
Tssr96446	transcription start site region 96446	1241 bp upstream
Tssr96447	transcription start site region 96447	1491 bp upstream
Tssr99954	transcription start site region 99954	1794 bp upstream
Tssr99955	transcription start site region 99955	1761 bp upstream
Tssr99956	transcription start site region 99956	1008 bp upstream
Tssr99957	transcription start site region 99957	948 bp upstream
Tssr99958	transcription start site region 99958	368 bp downstream
Tssr99959	transcription start site region 99959	460 bp downstream