rs52172202 SNP Detail

Summary

• ID
  rs52172202
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129307183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATG GATGGAGAGG AGGAAGGCAG
  G
  CTGGCAGGGA GGGGAGAGAG AAGAT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss133654589	ENSMUSSNP1361560	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321948809	CHEV_6_129280238	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52172202					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129307183 () rs orientation: forward

Symbol	Name	Function Class
Clec2m	C-type lectin domain family 2, member m	within coordinates
Tssr63594	transcription start site region 63594	1518 bp downstream
Tssr63595	transcription start site region 63595	1566 bp downstream
Tssr63596	transcription start site region 63596	1585 bp downstream