rs52172328 SNP Detail

Summary

• ID
  rs52172328
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99883185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTGCTCTG TAAAAGTAAA
  AATAGATACT GTTCCCTTAG TGCAAGAACA GATTTTATTA ATTTTAACCC ATGTGTCACT
  TAAAATCATT CCTAACTAGG GATTAATCCA CTCTTATATG AGTCTTCATT TCCCAGCTAG
  CCTTGATCTG TACACGTGCC CCTTTTCTTC CTCTGAGTAC AGTAACTGCG GCTAGGTCCA
  R
  TACAAAACCA AACAAAAACA AAACAAAGAC AACAAATAAA AAACAACACT AGCCAAAATA
  GCAAGACCAG AACACGAGGC TAGAGGGGAA TTGTACCAAC ACAAACATCC TCAGAAACTG
  AGCATTCACG GTCTGGCCGC AGAAATCCCC GCCATTCACA ACCAACCTGG GATGGGTTTA
  TGATGCCAGC TACATGGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132716381	ENSMUSSNP3118976	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52172328					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99883185 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3803	CpG island 3803	1182 bp proximal
Krtap17-1	keratin associated protein 17-1	875 bp downstream
Tssr110721	transcription start site region 110721	1633 bp downstream