rs52172719 SNP Detail

Summary

• ID
  rs52172719
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:69760013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTAGTCA GGTGAGAAAG
  AGCAAACGCC TGCCCAGGCT CAAAGTCTAA GAGTTAAAGA ATCTGCAGCG ACTGAAAGAA
  CTAACTTTCT GACAGGTGGA CAGGCTGGGG TGAAAGGCTA GCTGAGCGGG GTGGGGGATG
  GGGTGTGGGG GTGGGGGTGG GGAAGAAGCA TTCCACATCC CAGGCTTGTG GGAACCAAAT
  Y
  TTGTGTAAAA CGCCTTACAA AACACCTTGG CTTGTGGTTT TTAGATATGG AAAACAAAAC
  AAAACAAAAC AAAACAAACA AACAACAACA ACAACAAAAA CCAAGCAAAC AAACAAACAA
  AAAAAAAACC CCAGCCTAGC ATTCAGACCT TTCTCTTCCC GAAGCCTGGC TTCCCTCCCA
  CGCATGTAGT GTCCTCTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61285582	NES16896177	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52172719					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61285582	NES16896177	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:69760013 () rs orientation: forward

Symbol	Name	Function Class
Ank3	ankyrin 3, epithelial	within coordinates
Rr433504	regulatory region 433504	179 bp distal
Rr433505	regulatory region 433505	822 bp proximal
Rr433506	regulatory region 433506	1961 bp proximal
Tssr93970	transcription start site region 93970	32 bp downstream
Tssr93971	transcription start site region 93971	1301 bp upstream
Tssr93972	transcription start site region 93972	1583 bp upstream
Tssr93973	transcription start site region 93973	1617 bp upstream
Tssr93974	transcription start site region 93974	1646 bp upstream
Tssr93975	transcription start site region 93975	1672 bp upstream
Tssr93976	transcription start site region 93976	1795 bp upstream