rs52172752 SNP Detail

Summary

• ID
  rs52172752
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121138901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCT CTCTCTGTAT CCCTCCCTCC
  R
  TGTGTGTGTG TGTGTGTGTG TGTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss135718949	ENSMUSSNP4198427	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320903107	CHEV_3_121048170	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs52172752					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121138901 () rs orientation: forward

Symbol	Name	Function Class
Alg14	asparagine-linked glycosylation 14	within coordinates
Gm33310	predicted gene, 33310	within coordinates
Gm66111	predicted gene, 66111	1890 bp upstream
Rr367544	regulatory region 367544	31 bp downstream
Tssr35413	transcription start site region 35413	1915 bp upstream
Tssr35414	transcription start site region 35414	1881 bp upstream