rs52173604 SNP Detail

Summary

• ID
  rs52173604
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:110560482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGATGATT GGAAAACACA
  GATATTTACA TTATGATTCA AAATAGTAGA AAAATTATAG CCGGGCAGTG GTGGCTCATG
  CCTTTAATCC CAGCATTTGG GAAGCAGAGG CAGGCAGATT TCTGAGTTTG AGGCCAGCCT
  GCTCTACAGA GTGAGTTCCA GGACAGCCGG GGCTACACAG AGAAACCCTG TCTCAAACAC
  C
  AACAACAACA ACTAAAACAA TGACAACAAC AACAAAAGAA AAATTACAGT TTTCAAGTAG
  CAGCAAAAAT AATTTTATGG TTGGAGGGTC ATCACAGCAT CAGGAACTAT GTTATATGTC
  TCATATTAGG AAGTTTGAGA CCACTGTTCT AATGTCTTAG GGATTACAAA GTTTGTACTA
  TCACTGTACT TGATATATCA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147213785	ENSMUSSNP7131136	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52173604					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:110560482 () rs orientation: forward

Symbol	Name	Function Class
Ano3	anoctamin 3	Intron
Muc15	mucin 15	Intron
Tssr19336	transcription start site region 19336	1413 bp upstream
Tssr19337	transcription start site region 19337	1455 bp upstream
Tssr19338	transcription start site region 19338	1579 bp upstream