rs52173848 SNP Detail

Summary

• ID
  rs52173848
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76724687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TTTTCAGCAA GCTGAACCAT CTCTCAGCAC CTCAACAATA
  TATATATTTA TATAAATATA TATATATATA TATATATATA TATACATACA CACACACACA
  Y
  ACACACACAC GCACACACAC CTTTTTTTTC AATTAAAAAA GGGCAAGGTA AATAAGGGCA
  AGCTGTTTAA CAGCCATAGT GAATGGACCC ACAGAATAAA G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137907708	ENSMUSSNP3285319	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52173848					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76724687 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4784	CpG island 4784	1240 bp distal
Gm60317	predicted gene, 60317	1283 bp downstream
Rr468229	regulatory region 468229	1215 bp distal
Rr468230	regulatory region 468230	561 bp distal
Sptb	spectrin beta, erythrocytic	within coordinates
Tssr113983	transcription start site region 113983	1612 bp downstream