rs52174347 SNP Detail

Summary

• ID
  rs52174347
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:68719020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAACA GTGGCAAGAA CCCATCTGCA
  Y
  AGGGCTTGCT TGTGGCTGTG TGTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61831525	NES17768360	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	T	T	T		C	T	T	C		T
ss144512333	ENSMUSSNP1200517	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss324395787	CHEV_13_68709778	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs52174347					SNP	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61831525	NES17768360	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:68719020 () rs orientation: forward

Symbol	Name	Function Class
Mtrr	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	within coordinates
Rr1653	regulatory region 1653	627 bp upstream
Rr388642	regulatory region 388642	1767 bp downstream
Rr482077	regulatory region 482077	1100 bp distal
Rr482078	regulatory region 482078	1938 bp proximal
Tg(Tek-cre)12Flv	transgene insertion 12, Richard A Flavell	within coordinates